C0343 RNA
| C0343 RNA |
|
| Type: |
Gene; sRNA; |
| 2° structure: |
Predicted; PFOLD |
| Seed alignment: |
Hershberg R |
| Avg length: |
74.80 nucleotides |
| Avg identity: |
88.00% |
|
The C0343 RNA is a bacterial non-coding RNA of 74 nucleotides in length that is found between the ydaN and dbpA genes in the genomes of Escherichia coli and Shigella flexneri , Salmonella enterica and Salmonella typhimurium. This ncRNA was originally identified in E.coli using high-density oligonucleotide probe arrays (microarray)[1]. The function of this ncRNA is unknown.
FnrS RNA was later found to be transcribed from the same intergenic region as C0343 RNA.[2]
See also
References
- ^ Tjaden B, Saxena RM, Stolyar S, Haynor DR, Kolker E, Rosenow C (2002). "Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays". Nucleic Acids Res. 30 (17): 3732–8. doi:10.1093/nar/gkf505. PMC 137427. PMID 12202758. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=137427.
- ^ Durand S, Storz G (March 2010). "Reprogramming of anaerobic metabolism by the FnrS small RNA". Mol. Microbiol. 75 (5): 1215–31. doi:10.1111/j.1365-2958.2010.07044.x. PMC 2941437. PMID 20070527. http://www3.interscience.wiley.com/resolve/openurl?genre=article&sid=nlm:pubmed&issn=0950-382X&date=2010&volume=75&issue=5&spage=1215. Retrieved 2010-08-04.
External links